Jelle Scholtalbers
Full Stack Developer Laboratory Data Management Integration
France
Summary
🤩
Rockstar🎓
Top SchoolJelle Scholtalbers is a Full Stack Developer focused on laboratory data management and integration with 10 years' experience building bioinformatics platforms. He combines Perl, Python and SQL expertise with RDBMS design and hands-on NGS/annotation work rooted in plant genetics. As a technical lead at EMBL and now at LabRise Consulting he bridges research and production, shipping robust APIs and data workflows for labs. An active open-source contributor to Galaxy and Bioconda, he has helped mature Galaxy’s back-end APIs and automated package builds and tool wrappers to improve reproducibility. Based in France, he’s known for turning research pipelines into testable, container-friendly components that scale in production.
11 years of coding experience
15 years of employment as a software developer
Bachelor of Applied Science, Bioinformatics, Bachelor of Applied Science, Bioinformatics at Hanze
Stackoverflow
3reputation
0reached
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Github Skills (23)
api-doc10
tooling10
package-management10
python10
scripting10
bash10
conda10
workflow-engine10
script10
api10
build-automation10
bioinformatics10
sh10
galaxy10
shell10
Programming languages (13)
Github contributions (5)
galaxyproject/galaxy
Jul 2015 - Sep 2023
Data intensive science for everyone.
Role in this project:
Back-end Developer
Back-end DeveloperContributions:4 reviews, 36 PRs, 90 comments in 8 years 3 months
Contributions summary:Jelle contributed to the back-end functionality of the Galaxy project. Their work included exposing dataset states through the API, updating data library upload processes, and implementing filtering options for API invocations. They also modified the dataset API to include an `copied_from_ldda_id` field. The user's contributions focused primarily on improving the API and data handling capabilities within the Galaxy platform.
pythonsciencepipelinednadata-science
bgruening/galaxytools
Feb 2016 - Nov 2019
:microscope::books: Galaxy Tool wrappers
Role in this project:Back-end Developer
Back-end DeveloperContributions:9 commits, 5 PRs, 11 comments in 3 years 10 months
Contributions summary:Jelle contributed to the bismark tool wrappers within the Galaxy tools repository, updating the bismark tool to version 0.19.1 and then to 0.20.0. These updates involved code cleanup, adjustments to the galaxy profile and adding and testing relevant tests. The code changes focused on the Bismark mapping, Methylation Extractor, Deduplication, and Pretty Report wrappers, suggesting improvements and adaptations to the tool's functionality.
cheminformaticsmicroscopegalaxyprojgalaxygalaxy-tool
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