Aarthi Ramakrishnan
Bioinformatician II
New York, New York, United States
Summary
👤
Senior🎓
Top SchoolAarthi Ramakrishnan is a bioinformatician with nine years of experience developing and maintaining automated NGS analysis pipelines and applying ML to epigenomic datasets at Mount Sinai. Skilled in Python and R, she has hands-on expertise analyzing RNA-seq, ChIP-seq, and ATAC-seq in cluster environments and building reproducible workflows for high-throughput labs. Her work spans collaborative research—from cross-species RBP binding-site conservation and exon-level quantification to differential expression in AML—demonstrating both computational rigor and biological insight. Based in New York and trained with an MS in Bioinformatics, she combines production-focused pipeline engineering with a curiosity for translating epigenetic patterns into testable hypotheses.
9 years of coding experience
4 years of employment as a software developer
Master of Science (MS), Bioinformatics, Master of Science (MS), Bioinformatics at Indiana University–Purdue University IndianapolisBachelor's degree, Biotechnology, Bachelor's degree, Biotechnology at SRM University
English, Hindi, Tamil, Marathi
Github Skills (17)
seq10
rna-seq8
chip-seq8
bioinformatics7
genomics7
pipeline6
hosts6
snakemake6
deep-learning5
data-analysis4
cancer-genomics2
python2
mining2
databases1
visualization1
Programming languages (3)
Github contributions (5)
shenlab-sinai/NGS-Data-Charmer
Nov 2017 - Mar 2022
Contributions:73 commits, 1 PR, 85 pushes in 4 years 4 months
data-analysischip-seqpipelinerna-seq-analysishosts
shenlab-sinai/Gene-Attributes
May 2018 - Mar 2023
Contributions:39 pushes, 1 branch in 4 years 11 months
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