Adam Mark
Senior Bioinformatics Scientist
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolAdam Mark is a Senior Bioinformatics Scientist with 11 years of experience translating bench biology into scalable genomic analysis and clinical decision-support tools. He has built and automated NGS pipelines in AWS, led clinical annotation for tumor sequencing, and founded a bioinformatics consultancy to deliver precision-medicine analytics. His background spans wet-lab research in epigenetics and proteomics to production bioinformatics at startups and academic centers, enabling him to interpret complex variant calls in biological and clinical contexts. At institutions like UCSD CCBB, Strata Oncology, and ROSALIND he focused on DNA/RNA-seq, CNV detection, and pathway-level insights that drive actionable results. Based in San Diego, he combines hands-on development of reproducible pipelines with a practical knack for turning noisy genomic data into prescriptive treatment hypotheses.
11 years of coding experience
9 years of employment as a software developer
Master of Science (M.S.) Bioinformatics, Master of Science (M.S.) Bioinformatics at San Diego State UniversityJames Cook University
Github Skills (28)
variants10
webservice10
annotations9
seq9
bioinformatics9
api9
rna-seq9
genomics8
genetic8
snakemake7
sequencing7
data-storage7
bayesian6
bam6
scalable5
Programming languages (3)
Github contributions (5)
adammaikai/PipeMaster
Feb 2016 - Jul 2016
Contributions:17 commits, 13 pushes, 1 branch in 5 months
adammaikai/OmicsPipe2.0
Jul 2016 - Oct 2016
Contributions:4 commits, 1 PR, 4 pushes in 3 months
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