Adelme Bazin
Research Engineer at CNRS
Lyon, Auvergne-Rhône-Alpes, France
Summary
👤
Senior🎓
Top SchoolAdelme Bazin is a research engineer with 8 years of experience specializing in microbial genomics and bioinformatics software development, currently working on RNA-seq and single-cell sequencing methods at CNRS. He has a strong track record building reproducible pipelines (Python, Snakemake) for metagenomics, WGS (ONT/Illumina), variant calling, and pangenome graph analysis developed during a PhD and roles at Evotec and CEA. Pragmatic and tool-driven, he routinely writes utilities he needs for research and shares them with the community, focusing on making complex omics analyses reproducible and scalable. Mobile and collaborative, he enjoys teaching and mentoring colleagues while contributing to production-ready workflows for AMR, GWAS, and sequencing data processing. An uncommon strength is his blend of graph-based pangenome methods from academia with practical pipeline engineering for industry-grade sequencing projects.
8 years of coding experience
3 years of employment as a software developer
Master’s Degree, Bioinformatics, Master’s Degree, Bioinformatics at Université Claude Bernard Lyon 1
English, French, Italian
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (39)
snakemake10
package-management10
microbiology10
graph10
conda10
ncbi10
genomes10
microbial-genomics10
bioinformatics10
genomics10
bacteria10
genome-annotation10
bioconda10
comparative-genomics10
genome-assembly9
Programming languages (7)
Github contributions (5)
axbazin/synta
May 2019 - Sep 2024
Contributions:4 releases, 38 pushes, 1 branch in 5 years 5 months
axbazin/drawbank
Aug 2020 - Feb 2025
Contributions:6 pushes, 3 branches in 4 years 7 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.