Adrian Bubie
Senior Bioinformatics Scientist
New York, New York, United States
Summary
👤
Senior🎓
Top SchoolAdrian Bubie is a senior bioinformatics scientist with a decade of experience applying genomics and computational methods to cancer biology and clinical diagnostics. He has progressed through technical roles at Mount Sinai and Guardant Health, where he now shapes bioinformatics solutions for translational medicine while completing an MS in Bioinformatics at the University of Oregon. Comfortable scripting analyses and building reproducible pipelines, Adrian blends hands-on data modeling with product-minded engineering honed at GenomOncology and prior validation work in medical devices. He focuses on turning complex molecular data into actionable insights for human health, and often brings practical systems validation experience to algorithm development. An investigator at heart, he pairs rigorous academic training in biomedical engineering with a knack for shipping reliable bioinformatics tools in clinical settings.
10 years of coding experience
7 years of employment as a software developer
MS Bioinformatics and Genomics Bioinformatics, MS Bioinformatics and Genomics Bioinformatics at University of OregonBS Biomedical Engineering Tissue Engineering, BS Biomedical Engineering Tissue Engineering at Case Western Reserve University
English, Greek, French
Github Skills (18)
cancer-genomics7
bioinformatics7
genome6
genomics5
rna-seq5
signature5
extraction5
probability5
regression4
matrix4
sequence4
python3
pipeline3
mutation3
nextflow3
Programming languages (6)
Github contributions (5)
LosicLab/ViralMine
May 2019 - Sep 2020
A pipeline tool that mines unmapped RNA/DNA reads for viral sequences and predicts viral genotype (built for HBV)
Contributions:32 commits, 2 PRs, 7 pushes in 1 year 3 months
pipelinednaviralgenotypegenomics
Apb58/Rosalind-Problems
Feb 2016 - May 2018
Contributions:2 PRs, 100 pushes, 3 branches in 2 years 2 months
bioinformaticspythonrosalind
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