Ahmad Khoiri
PHD Candidate
Bangkok Metropolitan Area Thailand
Summary
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Top SchoolAhmad Khoiri is a PhD candidate in Bioinformatics and Systems Biology with eight years of experience dissecting plant and human microbiomes using amplicon, shotgun metagenomics, metatranscriptomics and genomics. Based in Bangkok, he combines hands-on wet-lab experience and teaching with advanced bioinformatics—proficient in R and Python—to build custom analysis pipelines and clear visualizations. He leverages both Illumina and Nanopore sequencing and applies machine learning to reveal hidden patterns in plant–microbe interactions. His background includes research and teaching roles at KMUTT, a visiting PhD stint at NIOO-KNAW, and international exchange at Osaka University, reflecting a collaborative, cross-disciplinary approach. Notably, he bridges fungal biotechnology and systems biology perspectives, bringing ecological context to computational analyses.
7 years of coding experience
2 years of employment as a software developer
Doctor's Degree, Bioinformatics and Systems Biology, Doctor's Degree, Bioinformatics and Systems Biology at King Mongkut's University of Technology ThonburiBachelor's degree, Biology/Biological Sciences, General, Bachelor's degree, Biology/Biological Sciences, General at Universitas Islam Negeri Maulana Malik Ibrahim
Github Skills (18)
package-management10
conda10
bioinformatics10
bioconda10
genome-assembly4
genome3
genomics3
assembly3
scaffolding3
genomes2
pipeline2
genetic1
java1
large-scale1
genetic-algorithm1
Programming languages (5)
Github contributions (5)
NuruddinKhoiry/blastMining
Jun 2022 - Dec 2022
Contributions:5 releases, 209 commits, 64 pushes in 6 months
NuruddinKhoiry/convertFQ
Jun 2022 - Jun 2022
Converting DNA to RNA or RNA to DNA in a fastq file
Contributions:2 releases, 2 PRs, 18 pushes in 6 days
dnafastqbioinformaticsconvertingrna
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