Ales Varabyou
Senior Scientist at Johns Hopkins Whiting School of Engineering
Baltimore, Maryland, United States
Summary
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Senior🎓
Top SchoolAles Varabyou is a Senior Scientist and computational biologist with 11 years of experience building open-source software and scalable pipelines for large-scale genomic and transcriptomic analysis. He designs high-performance tools in Rust, C++, Python and SQL to scale RNA-seq and comparative genomics from single samples to hundreds of thousands, and has led projects such as TieBrush, ORFanage, and CHESS 3 that improved gene catalogues and isoform resolution. His work spans human and viral genomics, including pangenomic HIV-1 analyses and BoloTie, the first method to detect recombinant SARS-CoV-2 lineages from mass sequencing data. Based in Baltimore, he combines rigorous academic training (PhD in Computational Biology, MS in Computer Science) with production-oriented engineering at institutions like Johns Hopkins and PacBio. Notably, he focuses on practical open-source methods that make large-scale, reproducible comparative genomics accessible to the community.
11 years of coding experience
5 years of employment as a software developer
Johns Hopkins UniversityDoctor of Philosophy - PhD Computational Biology, Doctor of Philosophy - PhD Computational Biology at Johns Hopkins Whiting School of EngineeringBachelor's Degree Human Biology Computer Science, Bachelor's Degree Human Biology Computer Science at Luther Collegehigh school Humanities/Humanistic Studies, high school Humanities/Humanistic Studies at Belarusian School of HumanitiesHigh School Chemistry, High School Chemistry at UWC Maastricht
English, Russian, Russian, Polish, German, Spanish
Github Skills (54)
summarize10
package-management10
conda10
bioinformatics10
bioconda10
bam9
sequencing9
genomics8
filter8
foreign7
gff6
c-library6
raspberry6
merge6
classify6
Programming languages (7)
Github contributions (5)
LCRRS/Palmer
Dec 2014 - Oct 2015
Contributions:103 commits, 63 pushes, 7 branches in 10 months
flightraspberry-piautonomousroboticsled
alevar/chimFinder
Jun 2017 - Feb 2024
Foreign DNA/RNA integration site detection
Contributions:5 releases, 2 PRs, 79 pushes in 6 years 8 months
dnabioinformaticsforeignperlsite-integration
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