Alex Soupir
Applied Research Scientist II at Moffitt Cancer Center
Tampa, Florida, United States
Summary
👤
Senior🎓
Top SchoolAlex Soupir is an Applied Research Scientist II with 8 years of experience translating spatial single-cell proteomic and transcriptomic data into actionable biological insights, currently leading R package and Shiny app development at Moffitt Cancer Center. He specializes in efficient C++-backed spatial statistics for multiplex immunofluorescence and Nanostring CosMX SMI spatial transcriptomics to map immune infiltrates and mechanisms of immunotherapy evasion across multicenter cohorts. His work spans large-scale DNA/RNA bioinformatics in ORIEN, functional data analysis, and reproducible tool-building that bridges computational rigor with wet-lab relevance. Trained as a microbiologist (PhD) and experienced from QC lab work to postdoctoral research, he brings both bench perspective and production-grade software craftsmanship to complex cancer immunology problems.
8 years of coding experience
Doctor of Philosophy - PhD, Microbiology, General, Doctor of Philosophy - PhD, Microbiology, General at South Dakota State University
Github Skills (25)
gene-expression9
cuda8
pytorch7
inference7
transformer6
gpt6
amd6
llm6
r-package6
development-environment5
mlops5
ide5
llama5
cancer-genomics5
visualization4
Programming languages (5)
Github contributions (5)
julia-wrobel/mxfda
Sep 2023 - Feb 2025
Contributions:4 releases, 19 PRs, 117 pushes in 1 year 5 months
FridleyLab/scSpatialSIM
Jun 2023 - Oct 2024
Contributions:6 releases, 9 PRs, 69 pushes in 1 year 3 months
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