Alex Stuckey
Senior Software Engineer - Bioinformatics
New Zealand
Summary
👤
Senior🎓
Top SchoolAlex Stuckey is a bioinformatics leader with 10+ years of experience building scalable genomic workflows and leading teams to deliver population-scale datasets. At Genomics England he was the principal architect for a pipeline that produced a ~78,000-sample population genomic dataset and later developed a rare variant analysis workflow used in COVID-19 research. He combines hands-on skills in workflow design, HPC, containerisation, cloud computing and Python with experience integrating electronic health records into a unified data layer for research. Now based in New Zealand, he mentors bioinformaticians while driving strategic projects that bridge genomic and clinical data. An early-career focus on evolutionary genomics and spatial transcriptomics gives him a strong grounding in both research and production environments.
10 years of coding experience
9 years of employment as a software developer
Master's Degree Bioinformatics, Master's Degree Bioinformatics at The University of Auckland
Github Skills (59)
hail10
spatial-transcriptomics10
genome-analysis10
pipeline9
fastq9
bioinformatics9
transcriptomics9
genomics9
predictor9
spatial8
fastq-format8
vep8
mvp7
transition7
batch7
Programming languages (7)
Github contributions (5)
Alexander-Stuckey/dotfiles
Dec 2017 - Aug 2020
Contributions:3 pushes, 1 branch in 2 years 8 months
Alexander-Stuckey/st_pipeline
Nov 2016 - Sep 2017
Contributions:2 PRs, 9 pushes in 10 months
transcriptomicsspatial-transcriptomicspipelinespatialmethod
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