Alexander Rogers
MGnify Web And Platform Project Leader
Cambridge, England, United Kingdom
Summary
👤
Senior🎓
Top SchoolAlexander Rogers is a software development project leader at EMBL-EBI, currently leading the MGnify web and platform team that builds open-source pipelines and web resources for microbiome metagenomics. With 11 years’ experience bridging research and product delivery, he combines a PhD in observational astrophysics with eight years in startups, giving him a strong grounding in scientific computing, data pipelines, and production web services. He is a hands-on full‑stack engineer fluent in Python, Django, Prefect, React and Kubernetes, equally comfortable writing HPC analysis pipelines and designing user-facing APIs and interfaces. His background in imaging and instrumentation informs a pragmatic approach to complex data workflows and reproducible research infrastructure. He also designs and delivers training and user-focused documentation, maintaining platforms such as a JupyterLab environment to help researchers adopt tools. Colleagues value him for turning whiteboard ideas into maintainable, open-source services that run at scale across clusters and cloud.
10 years of coding experience
13 years of employment as a software developer
Doctor of Philosophy (PhD) Astronomy and Astrophysics, Doctor of Philosophy (PhD) Astronomy and Astrophysics at The University of EdinburghMaster of Physics (MPhys) Physics, Master of Physics (MPhys) Physics at University of St AndrewsExchange scholar Physics, Exchange scholar Physics at The University of Texas at Dallas
Github Skills (126)
python10
arabic-nlp10
bash10
entity-linking10
fairness-ml10
cython10
genomics10
backbone10
data-preprocessing10
neural10
pipeline10
galaxy10
nlp10
corenlp10
shell10
Programming languages (11)
Github contributions (5)
EBI-Metagenomics/blog
Nov 2021 - Aug 2024
EBI metagenomics blog
Contributions:2 reviews, 3 PRs, 13 pushes in 2 years 9 months
ebimetagenomics
EBI-Metagenomics/notebooks
Feb 2022 - Jan 2025
Contributions:9 releases, 27 reviews, 42 PRs in 3 years
ebipythonmetagenomicsjupyterlab-extensionjupyter-notebook
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