Alexandre Coudray
Senior Data Scientist
Lausanne, Vaud, Switzerland
Summary
👤
Senior🎓
Top SchoolAlexandre Coudray is a Senior Data Scientist and computational biologist with six years of experience applying machine learning to genomics, currently leading pipeline development and product ownership at Alithea Genomics in Lausanne. He designs and deploys scalable Nextflow pipelines and web tools for high-throughput transcriptomics while driving R&D innovations that translate single-cell insights into actionable drug-sensitivity predictions. During his PhD at EPFL he developed state-of-the-art bulk deconvolution and an EM-based method (CLIFF) that integrates scRNA-seq with ex vivo drug screens to infer cell-population drug responses, validated across multiple datasets. Comfortable bridging lab and code, he has contributed diverse bioinformatics tools—from peak callers to TE analysis—and manages teams to deliver reproducible, production-ready workflows. Notably, he pairs deep domain expertise in cellular heterogeneity with practical product leadership in sequencing technology scale-up.
6 years of coding experience
3 years of employment as a software developer
Master Thesis, Bioinformatics, Master Thesis, Bioinformatics at The University of Texas at AustinMaster's degree, Life Sciences and Technology, Master's degree, Life Sciences and Technology at Ecole polytechnique fédérale de LausanneDoctor of Philosophy - PhD, Life Science, Computer Science, Doctor of Philosophy - PhD, Life Science, Computer Science at EPFL (École polytechnique fédérale de Lausanne)
Github Skills (17)
statistical-genetics8
gene-expression8
deconvolution6
bayesian4
python3
bayesian-inference3
composition3
bioinformatics3
machine-learning2
inference2
computational-biology2
rna-seq2
single-cell-analysis2
deep-learning2
weighted1
Programming languages (3)
Github contributions (5)
alexdray86/CLIMB
Jun 2022 - Mar 2023
Contributions:45 commits, 89 pushes, 1 branch in 9 months
alexdray86/pyTEnrich
Nov 2020 - Jul 2023
Contributions:47 pushes, 1 branch in 2 years 8 months
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