Alexandre Magalhães
Senior Computational Biologist
Berlin, Germany
Summary
👤
Senior🎓
Top SchoolAlexandre Magalhães is a Senior Computational Biologist at the Max Planck Institute for Molecular Genetics with over a decade of experience integrating high-throughput sequencing, single-cell and spatial omics, and CRISPR-based perturbation assays into robust analysis pipelines. He combines deep wet-lab expertise in plant molecular biology and advanced microscopy with strong computational skills in Python, R and machine learning to translate complex genomic datasets into biological insight. Alexandre has designed workflows across Illumina, PacBio, Nanopore, 10X and other platforms for both model and non-model organisms and applies AI-driven protein structure modeling for de novo design and antibody optimization. His interests include protein sequence grammar underlying liquid–liquid phase separation and transcriptional activity, a niche that bridges sequence-level patterns with functional regulation. He also brings practical IT and cloud experience (including AWS) and a hands-on tinkering background in CAD, 3D printing and electronics that supports custom experimental setups. Fluent in turning interdisciplinary problems into reproducible pipelines, he pairs academic rigor from TUM and Universidade do Minho with active engagement in open-science communities.
11 years of coding experience
Technical University of MunichMaster's degree, Plant Molecular Biology, Biotechnology and Bioentrepreneurship, 18, Master's degree, Plant Molecular Biology, Biotechnology and Bioentrepreneurship, 18 at Universidade do Minho
English, Spanish, Portuguese, French, Greek, German
Github Skills (49)
rna-seq10
comparative-genomics9
mass-spectrometry8
reproducible-research8
r8
genetic7
genomics7
libtorch6
command-line-interface6
inference5
sourceforge4
computational-neuroscience4
nextflow4
chip-seq4
genome-assembly4
Programming languages (9)
Github contributions (5)
alexpmagalhaes/R-course
Sep 2019 - Feb 2024
Contributions:24 pushes, 1 branch in 4 years 6 months
alexpmagalhaes/SFB924-R-course
Sep 2019 - Feb 2023
This is the repository for SFB924 R course
Contributions:10 commits, 8 PRs, 33 pushes in 3 years 6 months
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