Alexey Sergushichev
Assistant Professor at Washington University in St. Louis
Missouri, United States
Summary
👤
Senior🎓
Top SchoolAlexey Sergushichev is an assistant professor and computational biologist with 16 years of experience building widely used bioinformatics software and methods for omics analysis. He led development of the FGSEA gene set enrichment method—now downloaded over 10,000 times monthly and cited more than 1,000 times—and has produced multiple tools for metabolic network analysis and interactive expression exploration (Phantasus) that streamline access to tens of thousands of public datasets. His work bridges rigorous algorithm development, reproducible backend engineering (including contributions to OpenCPU), and practical web tools that enable broad adoption by the community. Alexey has established an international MSc program in Bioinformatics and Systems Biology, co-organized a global bioinformatics contest attracting thousands of participants, and supervised numerous students to advanced degrees. Now based at Washington University in St. Louis, he combines academic leadership with hands-on open-source development and a track record of translating complex systems biology problems into scalable software.
16 years of coding experience
12 years of employment as a software developer
Master of Science (MS), Computer Science, Master of Science (MS), Computer Science at Saint-Petersburg State University Information Technologies, Mechanic and Optics (University ITMO)Doctor of Philosophy - PhD, Computer Science, Doctor of Philosophy - PhD, Computer Science at ITMO University
English, Russian
Stackoverflow
1reputation
0reached
1answer
0questions
Github Skills (5)
package-management10
r10
github-integration9
server-side-scripting9
hdf6
Programming languages (11)
Github contributions (5)
opencpu/opencpu
Jul 2017 - Dec 2019
OpenCPU system for embedded scientific computation and reproducible research
Role in this project:
Backend Developer
Backend DeveloperContributions:7 commits, 5 PRs, 13 comments in 2 years 5 months
Contributions summary:Alexey's commits primarily focused on enhancing the OpenCPU system's backend functionalities. They addressed issues related to package loading and library listings, introducing support for loaded namespaces. The user modified server-side scripts, improving email sending capabilities and updating the configuration process. Further improvements included updates to GitHub integration and package management.
computationscientific-computingreproducibleopencpuembedded
assaron/opencpu
Jul 2017 - Aug 2023
OpenCPU system for embedded scientific computation and reproducible research
Contributions:9 pushes, 3 branches in 6 years 2 months
computationreproducibleopencpuembeddedscientific
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