Alexis Arnaudon
Postdoctoral Researcher at École polytechnique fédérale de Lausanne
Le Mont-sur-Lausanne, Vaud, Switzerland
Summary
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Senior🎓
Top SchoolAlexis Arnaudon is a data science developer and applied mathematician with over a decade of research and engineering experience, including a PhD from Imperial College London and postdoc roles at EPFL and Blue Brain. He specialises in biologically constrained neuronal modelling, statistical sampling (MCMC) and genetic optimisation of high-dimensional nonlinear systems, and has led the development of novel numerical approaches that improved the fidelity of brain simulations. His work spans network analysis, graph-based methods and morphological synthesis, resulting in 15 peer‑reviewed papers and collaborations with large initiatives like the Human Brain Project. Comfortable bridging research and software engineering, he builds and documents reproducible modelling toolchains and collaborates across interdisciplinary teams. Based in Switzerland, he combines deep mathematical rigour with practical Python tooling to translate complex biological data into validated computational models.
11 years of coding experience
2 years of employment as a software developer
Doctor of Philosophy (PhD), Applied Mathematics, Doctor of Philosophy (PhD), Applied Mathematics at Imperial College LondonMaster of Science (MS), Physique, Mathematiques, Master of Science (MS), Physique, Mathematiques at Ecole polytechnique fédérale de LausanneMaster of Science - MS, Physics, Master of Science - MS, Physics at EPFL
French, English
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (139)
computational-neuroscience10
python10
feature-extraction10
network-analysis10
windows10
connectivity10
clustering10
scientific-computing10
classification-algorithm10
neurons10
modularity10
linux10
electrophysiology10
dtw10
stochastic-processes10
Programming languages (7)
Github contributions (5)
arnaudon/NeuroR
May 2020 - Jul 2021
A collection of tools to repair morphologies
Contributions:130 pushes, 20 branches in 1 year 2 months
neuroimagingneuronsmorphologieselectrophysiologyrepair
BlueBrain/diameter-synthesis
Oct 2019 - Sep 2022
Synthesize diameters of neuronal morphologies
Contributions:5 releases, 19 reviews, 126 commits in 2 years 11 months
neurosciencemorphologysynthesiscomputational-neuroscienceneurons
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