Alice Mataigne
Research Engineer
Brittany, France
Summary
🤩
Rockstar🎓
Top SchoolAlice Mataigne is a research engineer with 9 years’ experience applying Python and R to bioinformatics and agro-environmental research, bridging academic rigor and production-grade workflows. She has designed and deployed Nextflow and cluster-based pipelines, built data ingestion packages and RDF knowledge graphs, and delivered user-friendly web interfaces and dashboards for complex biological data. Her background includes a PhD in ecology and international collaboration with the Max Planck Institute, informing data-driven studies of plant root microbiomes and metabolic complementarity. Alice also brings practical CI/CD, performance optimization and cloud/cluster deployment experience from both public research labs and industry projects, and has translated domain ontologies into reusable data standards and SPARQL-accessible services. Notably, she blends hands-on software engineering with ontology design and semantic web integration, making research data both FAIR and operational.
9 years of coding experience
Master's Degree, Bioinformatique, modélisation, statistiques, Master's Degree, Bioinformatique, modélisation, statistiques at Université de RouenMaster's Degree, Biology of organisms and ecology, Master's Degree, Biology of organisms and ecology at Université catholique de LouvainBachelor's degree, Sciences, technologies, health, option biology-ecology, Bachelor's degree, Sciences, technologies, health, option biology-ecology at Université Marie et Louis PasteurDoctor's Degree, Ecology, Doctor's Degree, Ecology at Université de Rennes I
French, English
Github Skills (62)
docker10
python10
genes10
package-management10
data-science10
conda10
workflow-engine10
sequencing10
bioinformatics10
pipeline10
genomics10
science10
bioconda10
rna-seq9
comparative-genomics8
Programming languages (8)
Github contributions (5)
alimatai/AdaptSearch_Documentation
Apr 2018 - Feb 2025
Contributions:32 pushes, 1 branch in 6 years 11 months
alimatai/adaptsearch
Dec 2016 - Feb 2025
Contributions:4 PRs, 18 pushes, 4 branches in 8 years 4 months
rnaseqpipelineadaptiveorthologsgenomics
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