Aljoscha Gerber

Bioinformatician

Dresden, Saxony, Germany
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Summary

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Aljoscha Gerber is a bioinformatician with 10 years’ experience building production-ready genomics and proteomics workflows that bridge research and clinical pipelines. He has led containerized workflow adoption, GitLab CI/CD, SLURM/Singularity HPC, and REST API development (FastAPI + SQLAlchemy) at DKMS Life Science Lab, and previously established NGS pipelines and supervised molecular projects in immuno-oncology at Provecs. Pragmatic and self-taught, he moved from bench biochemistry to programming after automating transcriptomics analyses with Unix, R, Python and Docker, and now adds SQL, CI/CD and early Julia experimentation to his toolkit. He pairs domain expertise in NGS, mass spectrometry and cancer immunology with reproducible engineering practices to deliver scalable, auditable analyses. A contributor to notable open-source projects, he has extended backend functionality in the popular discord-jda repository, showing comfort with collaborative codebases beyond bioinformatics. Based in Dresden, he combines persistence, fast learning and a user-focused mindset to turn complex biological data into actionable insights.
code10 years of coding experience
job6 years of employment as a software developer
bookDiplom, Biochemistry, 2.0, Diplom, Biochemistry, 2.0 at Universität Greifswald
languagesGerman, English
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Stackoverflow

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Github Skills (6)

javas10
api10
java10
jde10
discord10
rest-api9

Programming languages (12)

TypeScriptMDXPowerShellJavaShellC++JavaScriptGo

Github contributions (5)

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discord-jda/JDA

Dec 2015 - Sep 2018

Java wrapper for the popular chat & VOIP service: Discord https://discord.com
Role in this project:
userBackend Developer
Contributions:1 review, 89 commits, 47 PRs in 2 years 8 months
Contributions summary:Aljoscha primarily focused on modifying and extending the AccountManagerImpl in the discord-jda/jda repository, specifically to support features like avatar updates, email changes, password updates and username changes within the Discord platform. They added support for presence management by incorporating the ability to set the current game and display status of the user. Furthermore, the user implemented the methods and classes to support the ability to leave guilds.
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Contributions:7 releases, 32 commits, 48 pushes in 1 year 1 month
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Aljoscha Gerber - Bioinformatician