Allison聽Creason
Group Lead - Computational Precision Oncology
Portland, Oregon, United States
Summary
馃懁
Senior馃帗
Top SchoolAllison Creason is a Group Lead in Computational Precision Oncology at OHSU with over a decade of experience applying machine learning and multi-omics analyses to translate complex cancer biology into clinically actionable insights. She leads a multidisciplinary team developing scalable, reproducible ML/AI pipelines for histopathology, spatial omics, and sequencing data鈥攚ork that has been adopted across cancer centers and integrated into CLIA/CAP clinical workflows. As HTAN Data Science co-Lead and Co-Investigator on multiple NCI grants, she shapes data strategy for large consortia while championing FAIR principles and community benchmarking. Her technical breadth spans bulk and single-cell genomics, proteomics, multiplexed tissue imaging, and workflow engineering with Galaxy, Nextflow, and CWL. Notably, she has bridged research and diagnostic practice by implementing ACMG-compliant variant interpretation pipelines and driving multi-modal biomarker validation in clinical trials.
10 years of coding experience
6 years of employment as a software developer
Doctor of Philosophy (PhD), Molecular and Cellular Biology, Doctor of Philosophy (PhD), Molecular and Cellular Biology at Oregon State University
Github Skills (26)
galaxy10
bioinformatics9
simultaneous8
conda8
package-management8
sample-data7
metagenomics7
bioconda6
chip-seq6
tla6
imagej6
lda5
image4
naive-bayes4
python3
Programming languages (8)
Github contributions (5)
ohsu-comp-bio/quantification
Sep 2020 - Nov 2021
Quantification module for mcmicro
Contributions:7 commits, 1 PR, 5 pushes in 1 year 2 months
quantification
ohsu-comp-bio/S3segmenter
Jul 2020 - Nov 2021
Contributions:1 review, 2 PRs, 6 pushes in 1 year 4 months
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