Allison Creason
Portland, Oregon, United States
Summary
👤
Senior🎓
Top SchoolAllison Creason is a Group Lead in Computational Precision Oncology at OHSU with over a decade of experience applying machine learning and multi-omics analyses to translate complex cancer biology into clinically actionable insights. She leads a multidisciplinary team developing scalable, reproducible ML/AI pipelines for histopathology, spatial omics, and sequencing data—work that has been adopted across cancer centers and integrated into CLIA/CAP clinical workflows. As HTAN Data Science co-Lead and Co-Investigator on multiple NCI grants, she shapes data strategy for large consortia while championing FAIR principles and community benchmarking. Her technical breadth spans bulk and single-cell genomics, proteomics, multiplexed tissue imaging, and workflow engineering with Galaxy, Nextflow, and CWL. Notably, she has bridged research and diagnostic practice by implementing ACMG-compliant variant interpretation pipelines and driving multi-modal biomarker validation in clinical trials.
10 years of coding experience
7 years of employment as a software developer
Bachelor of Science (BS), Biology, General, Summa Cum Laude, Bachelor of Science (BS), Biology, General, Summa Cum Laude at Oregon State University
Github Skills (25)
bioinformatics10
galaxy10
conda9
bioconda8
metagenomics8
package-management8
chip-seq7
sample-data7
simultaneous6
tla6
imagej5
lda5
image-processing4
image4
shading4
Programming languages (7)
Github contributions (5)
ohsu-comp-bio/quantification
Sep 2020 - Nov 2021
Quantification module for mcmicro
Contributions:7 commits, 1 PR, 5 pushes in 1 year 2 months
quantification
ohsu-comp-bio/S3segmenter
Jul 2020 - Nov 2021
Contributions:1 review, 2 PRs, 6 pushes in 1 year 4 months
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