Alon Oyler-yaniv

Lecturer, Principal Investigator

Boston, Massachusetts, United States
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Summary

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Senior
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Top School
Alon Oyler-yaniv is a biophysicist and systems biologist with nine years of interdisciplinary experience building optical instruments, quantitative imaging pipelines, and computational analysis for immunology and tissue-scale biology. As a Lecturer and Principal Investigator at Harvard Medical School he integrates light-sheet microscopy, custom instrumentation and software (C++, Python, MATLAB) to reveal host–pathogen and wound-healing dynamics in intact tissues. His background spans hands-on biophysics—optical trapping, AFM, flow cytometry—and in vivo immune assays, enabling a rare combination of experimental rigor and computational modeling. He has a Ph.D. in Physics and a track record of translating physical principles (e.g., cytokine–membrane interactions, spatial cell‑cell signaling) into scalable imaging and analysis frameworks. Colleagues rely on him to bridge optics, data science, and immunology to ask and answer questions that single-discipline teams often miss.
code9 years of coding experience
job2 years of employment as a software developer
bookDoctor of Philosophy (Ph.D.), Physics, Doctor of Philosophy (Ph.D.), Physics at Ben Gurion University
bookMs.C., Physics, Ms.C., Physics at Ben-Gurion University of the Negev
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Github Skills (37)

viewer8
image-viewer8
image7
spim7
visualization7
python7
scientific-visualization6
segmentation6
image-processing6
image-reconstruction5
imaging4
datasets4
numpy4
graphical-user-interface4
microscopy4

Programming languages (5)

JavaC++Jupyter NotebookMATLABPython

Github contributions (5)

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oylab/oyLabImaging

Sep 2020 - Jan 2023

Code for analysis and organization of microscopy data
Contributions:1 review, 106 commits, 6 PRs in 2 years 4 months
alonyan/DIP

Oct 2019 - Apr 2022

Contributions:21 commits, 36 pushes, 1 branch in 2 years 6 months
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Alon Oyler-yaniv - Lecturer, Principal Investigator