Amine Ghozlane
Bioinformatics Engineer
Paris, Ile-de-France
Summary
👤
Senior🎓
Top SchoolAmine Ghozlane is a senior bioinformatics engineer based in Paris with 14 years of experience building tools and pipelines for OMICs data, focused primarily on metagenomics and microbiome research. At Institut Pasteur since 2015 he develops production-grade metagenomics solutions, drawing on a background in assembly, functional annotation and antibiotic resistance from his postdoc at INRA. His training spans computational optimization, parallelization and structural modeling—from a PhD in computer science to hands-on protein-structure and enzyme active-site prediction work at INSERM. Comfortable at the intersection of software engineering and biology, he combines algorithmic rigor with practical lab-facing tools for human and animal microbiota studies. He also brings less obvious strengths in metaheuristic optimization and metabolomic network modeling, skills forged during doctoral and early research projects. Fluent in French research ecosystems, he pairs academic depth with long-term operational experience in public research institutes.
14 years of coding experience
2 years of employment as a software developer
Master, Bioinformatique – Ingénierie logicielle, Master, Bioinformatique – Ingénierie logicielle at Université Paris CitéDUT, Génie Biologique option Analyses Biologiques et Biochimiques, DUT, Génie Biologique option Analyses Biologiques et Biochimiques at IUT Créteil-Vitry
English
Github Skills (97)
package-management10
reproducible-science10
conda10
bioinformatics10
singularity9
nextflow9
pipeline9
bioconda9
cli9
shell9
phylogeny9
rna-seq9
slurm9
dataflow9
seq9
Programming languages (9)
Github contributions (5)
aghozlane/rNVD3shaman
Aug 2016 - Oct 2019
Contributions:1 release, 8 pushes, 1 tag in 3 years 2 months
chartsnvd3data-visualizationinteractive-chartsvisualization
metagenopolis/meteor
Nov 2023 - Apr 2025
Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform specie level taxonomic assignments and functional analysis.
Contributions:62 releases, 21 reviews, 26 PRs in 1 year 4 months
functionnal-profilingmetagenomicsstrain-profilingtaxonomic-profiling
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