Amit Indap
Independent Consultant at Embed Bioinformatics
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolAmit Indap is an independent bioinformatics consultant with 15 years of experience translating genomic data into actionable insights for immuno-oncology, CDx development, and vaccine projects. He bridges deep domain knowledge in human genetics with practical software engineering—building Nextflow pipelines, Streamlit and Quarto apps, and AWS-deployed WGS workflows—to accelerate early-stage product development. His career spans industry leaders (Pfizer, Illumina, Xencor) where he delivered analytic platforms for ctDNA, antibody discovery, and tumor profiling, and he’s also contributed to LLM prompt evaluation for complex genomics reasoning at OpenAI. Trained as a molecular biologist-turned-computer scientist with a PhD in bioinformatics, he repeatedly pursues steep learning curves (Bayesian graphical models, immunology, LLMs) to solve novel problems. Clients value his resourcefulness, ability to make analyses accessible to non-technical stakeholders, and track record of shipping reproducible pipelines that move projects toward validation and deployment.
15 years of coding experience
19 years of employment as a software developer
M.S. Bioinformatics, M.S. Bioinformatics at Medical College of WisconsinThe University of ArizonaPh.D. Bioinformatics, Ph.D. Bioinformatics at Boston College
Stackoverflow
71reputation
2kreached
1answer
5questions
Github Skills (81)
genomes9
differential-expression8
entrez8
genomics8
transcriptomics8
bioinformatics8
genome8
molecule7
tidyverse7
bioconductor7
reproducible-science7
nextflow7
single-cell-analysis7
tibble7
assembler7
Programming languages (11)
Github contributions (5)
indapa/resume
May 2015 - Oct 2019
Contributions:41 pushes in 4 years 5 months
indapa/VcfPythonUtils
Jan 2011 - Mar 2014
Contributions:433 commits in 3 years 2 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.