Amjad Alkodsi
Bioinformatics Expert
Lausanne Metropolitan Area Switzerland
Summary
👤
Senior🎓
Top SchoolAmjad Alkodsi is a bioinformatics expert with 10 years of experience bridging cancer genomics research and biotech product development, currently advancing analytical solutions at SOPHiA GENETICS in Lausanne. He holds a PhD in cancer genomics from the University of Helsinki and combines deep statistical and machine learning skills with hands-on sequencing and R programming to translate complex genomic data into clinically actionable insights. His background spans academia and industry—from postdoctoral research to senior bioinformatics roles—reflecting a track record of shipping robust pipelines and visualization tools for precision oncology. Fluent in both computational methodology and practical product needs, he excels at turning novel research findings into scalable bioinformatics features used in real-world diagnostics.
10 years of coding experience
9 years of employment as a software developer
Master of Science - MS, Computational Biology, Master of Science - MS, Computational Biology at Aalto UniversityMaster of Science - MS, Computational Biology, Master of Science - MS, Computational Biology at KTH Royal Institute of TechnologyBachelor's degree, Biomedical/Medical Engineering, Bachelor's degree, Biomedical/Medical Engineering at Damascus UniversityDoctor of Philosophy - PhD, Cancer Genomics - Bioinformatics, Doctor of Philosophy - PhD, Cancer Genomics - Bioinformatics at University of Helsinki
English, Arabic, Finnish, German
Github Skills (35)
genomics8
rna-seq8
bioinformatics8
r8
parallel7
data-mining7
sequencing7
classification7
python7
kaggle7
core-package6
lightgbm6
machine-learning6
gradient6
next-generation-sequencing6
Programming languages (5)
Github contributions (5)
alkodsi/ctDNAtools
Sep 2019 - Mar 2020
Contributions:136 commits, 87 pushes, 1 branch in 5 months
PapenfussLab/gridss
May 2016 - Jun 2017
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Contributions:16 comments, 7 issues in 1 year 1 month
genomicsbioinformaticsgenomicidentificationsuite
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