André Lamúrias

Assistant Professor at NOVA School of Science and Technology

Lisbon, Portugal
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Summary

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Senior
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Top School
André Lamúrias is an Assistant Professor and computational biologist with 11 years of experience specializing in biomedical text mining, NLP, machine learning and ontology-driven methods. He holds a PhD in Bioinformatics (distinction) from the University of Lisbon and has translated academic research into applied projects—from deep learning question-answering systems to entity linking for clinical documents. His recent postdoctoral work applied Graph Neural Networks to metagenomics, clustering DNA sequences to reveal uncultured microbial diversity, showcasing a rare bridge between text-centric bioinformatics and sequence-based data science. Based in Lisbon, he combines teaching and supervision with hands-on research, regularly moving between academia and industry problems. Colleagues describe him as someone who turns complex biological questions into tractable computational pipelines while keeping an eye on real-world biomedical impact.
code11 years of coding experience
job5 years of employment as a software developer
bookDoctor of Philosophy - PhD, Bioinformatics, Approved with Distinction and Honours, Doctor of Philosophy - PhD, Bioinformatics, Approved with Distinction and Honours at University of Lisbon
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Github Skills (12)

mer10
biomedical-ontologies10
ontologies9
biomedical9
entity8
bioinformatics7
nlp7
retrieval6
music1
google-music1
greasemonkey1
react1

Programming languages (3)

ShellTeXPython

Github contributions (5)

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lasigeBioTM/BOLSTM

Nov 2017 - Nov 2019

Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies
Contributions:103 commits, 1 PR, 38 pushes in 1 year 11 months
nlpmemoryrelationstermlong-short-term-memory
lasigeBioTM/ICRel

Sep 2017 - Oct 2019

Identifying Cellular Relations
Contributions:7 commits, 1 PR, 9 pushes in 2 years 1 month
cellularrelations
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André Lamúrias - Assistant Professor at NOVA School of Science and Technology