Andrew Baumgartner
Biostatistician
Seattle, Washington, United States
Summary
👤
Senior🎓
Top SchoolAndrew Baumgartner is a biostatistician and theoretical physicist with eight years of experience applying statistical physics, information theory, and probabilistic machine learning to biological and biomedical data. He models stochastic processes underlying electronic health records, single-cell and bulk multi-omics, and immune repertoires to uncover dynamics of differentiation, clonal evolution, and disease trajectories. At Phenome Health he leads development of portable probabilistic models and ensures statistical validity across diverse projects, building on prior research scientist and postdoc roles at the Institute for Systems Biology. His work blends rigorous theory (PhD in theoretical and mathematical physics) with practical data science, translating statistical mechanics concepts into actionable biomedical analyses. Notably, he has applied uncommon tools—like topological data analysis and holographic principles—to real-world genomics problems, reflecting a knack for interdisciplinary methodology. Based in Seattle, he combines deep quantitative modeling with a focus on reproducible, portable approaches for clinical and systems medicine applications.
8 years of coding experience
6 years of employment as a software developer
Doctor of Philosophy - PhD, Theoretical and Mathematical Physics, Doctor of Philosophy - PhD, Theoretical and Mathematical Physics at University of WashingtonBachelor of Science (B.S.), Physics and Mathematics, Bachelor of Science (B.S.), Physics and Mathematics at Manhattan College
Github Skills (30)
transcriptomics10
single-cell-analysis10
bioinformatics10
scanpy9
scales8
python8
machine-learning8
rna-velocity8
data-science7
meta-analysis7
system-identification7
rna-seq7
nonlinear-dynamics6
dynamical-systems6
velocity5
Programming languages (1)
Github contributions (5)
Hadlock-Lab/FPdiffmaps
Dec 2024 - Dec 2024
Contributions:12 pushes in 1 day
quarkmatter/ISB-GDL-group
Jan 2023 - Feb 2023
Contributions:2 pushes, 1 branch in 21 days
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