Anthony Barente
Senior Data Scientist
United States
Summary
👤
Senior🎓
Top SchoolAnthony Barente is a Senior Data Scientist with 8 years of experience applying computational and statistical methods to proteomics, phosphoproteomics, and cell signaling to accelerate drug discovery and biomarker identification. He combines deep domain expertise from a PhD in Genome Sciences with hands-on engineering—building AWS applications, R Shiny GUIs, Snakemake pipelines, and Airflow-powered Python/Django tooling—to turn large mass spectrometry and NGS datasets into actionable insights. At Bristol Myers Squibb he leads omics investigations for mechanism-of-action and liability assessment, and at Ginkgo he scaled automated analysis for thousands of daily instrument samples. He has a track record of shipping performant research software (pyAscore, Cython accelerations) and translating deep learning and statistical methods into production workflows. Colleagues rely on him to bridge wet-lab questions and robust data engineering, often surfacing biologically meaningful signals that aren’t obvious from raw high-throughput data alone.
8 years of coding experience
9 years of employment as a software developer
Bachelor's degree, Cellular and Molecular Biology, Bachelor's degree, Cellular and Molecular Biology at Western Washington UniversityDoctor of Philosophy (PhD), Genome Sciences: Advanced Data Science Option, Doctor of Philosophy (PhD), Genome Sciences: Advanced Data Science Option at University of Washington - School of Medicine
gàidhlig, English
Github Skills (54)
bioinformatics10
ms-data9
mass-spectrometry9
conda9
modification9
cpp8
bioconda8
python8
localization8
openms8
linux8
windows8
cython8
package-management8
translation8
Programming languages (7)
Github contributions (5)
Villen-Lab/pyAscoreValidation
Mar 2022 - Sep 2022
Contributions:18 commits, 14 pushes, 1 branch in 6 months
Villen-Lab/pyAscore
Aug 2019 - Apr 2022
A python package for fast post translational modification localization, powered by Cython.
Contributions:9 releases, 2 reviews, 171 commits in 2 years 8 months
cpppythonpost-translational-modificationtranslationobjectmapper
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