Arafat Rahman
Postdoctoral Researcher at Oregon State University
Corvallis, Oregon, United States
Summary
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Senior🎓
Top SchoolArafat Rahman is a postdoctoral researcher and genomics-focused bioinformatician with nine years of experience studying bacterial genetics, molecular epidemiology, and host-microbe interactions. He combines a PhD in Genetics, Genomics, and Bioinformatics from UC Riverside with hands-on tool development—authoring bioinformatics pipelines like Beav (packaged in Bioconda) and the Tangler R package for cophylogeny visualization. His work spans peer-reviewed publications, conference presentations, and teaching at both university and workshop levels, where he mentors students in sequencing, HPC, and microbial genomics. Based in Corvallis, he bridges computational methods and wet-lab questions, with a track record of translating research into reproducible software and community training.
10 years of coding experience
6 years of employment as a software developer
Doctor of Philosophy, Genetics, Doctor of Philosophy, Genetics at University of California, RiversideMaster's degree, Microbiology, General, Master's degree, Microbiology, General at University of Dhaka
English, Bengali
Github Skills (23)
chord-diagram10
package-management10
conda10
microbial-genomics10
circos10
phylogenetic-trees10
bioinformatics10
comparative-genomics10
radar-chart9
genomics-visualization9
bioconda9
genomics9
visualization8
matplotlib8
python7
Programming languages (5)
Github contributions (5)
acarafat/BioinfUtils
Mar 2019 - Jan 2023
Contributions:29 commits, 64 pushes, 1 branch in 3 years 10 months
acarafat/Genotype_clade_visualizer
Dec 2016 - Jan 2023
Contributions:1 push, 1 branch in 6 years 2 months
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