Artem Sokolov
Senior Director, Head Of Computational Biology
Boston, Massachusetts, United States
Summary
👤
Senior🎓
Top SchoolArtem Sokolov is a computational biology leader with 11 years of experience translating complex biological data into actionable insights, currently serving as Senior Director and Head of Computational Biology at Etiome in Boston. Previously he led informatics and modeling at Harvard Medical School’s Laboratory of Systems Pharmacology, contributing to high-impact work on drug repurposing for Alzheimer’s, scalable multiplexed tissue imaging pipelines, and robust ML evaluation methods. His academic pedigree includes a PhD in Computer Science and influential postdoctoral work at UCSC on tumor stemness, graph-regularized models, and award-winning gene network inference methods. He blends deep algorithmic expertise with practical pipeline engineering to move research into reproducible, production-ready tools. Active across GitHub and Google Scholar, he bridges open science and product-focused development, often surfacing rigorous evaluation practices not obvious in many bioinformatics efforts. Colleagues value him for turning ambitious, data-dense projects into scalable, interpretable solutions that inform both research and clinical translation.
11 years of coding experience
11 years of employment as a software developer
Doctor of Philosophy (PhD) Computer Science, Doctor of Philosophy (PhD) Computer Science at Colorado State University
Stackoverflow
13,496reputation
1.1mreached
286answers
23questions
plotly
top-5%
tidyverse
top-5%
r
top-1%
dplyr
top-5%
Github Skills (177)
seq10
rcpp10
microscopy10
reproducible-science10
r10
dplyr10
pipeline10
rna-seq10
r-package10
reproducible-research10
multiple-choice10
bioinformatics10
singularity9
nextflow9
plotly9
Programming languages (14)
Github contributions (5)
labsyspharm/mcmicro-ilastik
Apr 2020 - Feb 2023
Ilastik segmentation module for mcmicro
Contributions:9 releases, 14 PRs, 8 pushes in 2 years 10 months
ilastiksegmentation
labsyspharm/mcmicro-flowSOM
Jul 2021 - Oct 2023
An MCMICRO module for clustering cell types using the flowSOM algorithm
Contributions:2 releases, 2 PRs, 1 push in 2 years 3 months
clusteringcell-typesflowsom
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