Arthur Gilly
Associate Director, Translational Genetics
New York, New York, United States
Summary
👤
Senior🎓
Top SchoolArthur Gilly is an Associate Director in Translational Genetics who applies over a decade of genomics, statistical genetics, and software engineering to turn large-scale human sequencing and EHR datasets into production-ready analytical systems. At Regeneron he architects scientific software and maintains tool stacks for analyzing millions of exomes, leading cross-functional teams to modernize legacy code and implement robust CI/CD and data-access patterns. His background spans academic genomics (PhD, Cambridge) and industry roles at Helmholtz Munich and the Sanger Institute, where he built infrastructure for multi-omics and precision-health analytics. An entrepreneur and maker, he co-founded Laos’ first collaborative makerspace and led IoT and geospatial projects that bridge low-resource development and data science. He also co-founded ADAPT AI, signaling a continued interest in translating research-grade methods into real-world products. Colleagues describe him as a rare hybrid of quantitative scientist, systems architect, and hands-on technical leader who prioritizes reproducibility and practical impact.
11 years of coding experience
7 years of employment as a software developer
Master of Science (MSc), Applied Mathematics, Master of Science (MSc), Applied Mathematics at National School of Computer Science and Applied Mathematics of GrenobleDoctor of Philosophy - PhD, Genome Sciences/Genomics, Doctor of Philosophy - PhD, Genome Sciences/Genomics at University of CambridgeBachelor of Science (BSc), Engineering, Bachelor of Science (BSc), Engineering at Ecole nationale supérieure d'Informatique et de Mathématiques AppliquéesExchange semester / Master courses, Dept. of Bio & Brain Engineering, Exchange semester / Master courses, Dept. of Bio & Brain Engineering at Korea Advanced Institute of Science and Technology
French, English, German, Russian
Github Skills (138)
command-line-tool10
ssh10
bcftools10
cli10
tui10
bam9
annotate9
rust9
htslib9
singularity-container9
nfc9
remote-execution9
visualization9
bioinformatics9
cmd9
Programming languages (11)
Github contributions (5)
hmgu-itg/metacarpa
Jul 2015 - Oct 2016
Contributions:3 releases, 16 commits, 6 pushes in 1 year 2 months
hmgu-itg/man_qq_annotate
Mar 2018 - Feb 2022
Creates Manhattan and QQ plots with annotated peaks.
Contributions:30 commits, 41 pushes, 4 comments in 3 years 11 months
qq
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