Arthur Gilly
Associate Director, Translational Genetics
New York, New York, United States
Summary
👤
Senior🎓
Top SchoolArthur Gilly is an Associate Director in Translational Genetics who applies over a decade of genomics, statistical genetics, and software engineering to turn large-scale human sequencing and EHR datasets into production-ready analytical systems. At Regeneron he architects scientific software and maintains tool stacks for analyzing millions of exomes, leading cross-functional teams to modernize legacy code and implement robust CI/CD and data-access patterns. His background spans academic genomics (PhD, Cambridge) and industry roles at Helmholtz Munich and the Sanger Institute, where he built infrastructure for multi-omics and precision-health analytics. An entrepreneur and maker, he co-founded Laos’ first collaborative makerspace and led IoT and geospatial projects that bridge low-resource development and data science. He also co-founded ADAPT AI, signaling a continued interest in translating research-grade methods into real-world products. Colleagues describe him as a rare hybrid of quantitative scientist, systems architect, and hands-on technical leader who prioritizes reproducibility and practical impact.
10 years of coding experience
7 years of employment as a software developer
Master of Science (MSc), Applied Mathematics, Master of Science (MSc), Applied Mathematics at National School of Computer Science and Applied Mathematics of GrenobleDoctor of Philosophy - PhD, Genome Sciences/Genomics, Doctor of Philosophy - PhD, Genome Sciences/Genomics at University of CambridgeBachelor of Science (BSc), Engineering, Bachelor of Science (BSc), Engineering at Ecole nationale supérieure d'Informatique et de Mathématiques AppliquéesExchange semester / Master courses, Dept. of Bio & Brain Engineering, Exchange semester / Master courses, Dept. of Bio & Brain Engineering at Korea Advanced Institute of Science and Technology
French, English, German, Russian
Github Skills (171)
command-line-tool10
ssh10
bam10
bcftools10
cli10
infrared10
tui10
samtools10
manhattan10
rust9
fasta9
htslib9
singularity-container9
nfc9
genomics9
Programming languages (10)
Github contributions (5)
hmgu-itg/man_qq_annotate
Mar 2018 - Feb 2022
Creates Manhattan and QQ plots with annotated peaks.
Contributions:30 commits, 41 pushes, 4 comments in 3 years 11 months
pythondata-visualizationpeaksannotatedplots
agilly/un-cnvc
Oct 2017 - Sep 2021
Contributions:20 commits, 26 pushes, 1 branch in 3 years 11 months
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.