Arun Patil
Staff Scientist at Lieber Institute for Brain Development
Baltimore, Maryland, United States
Summary
🤩
Rockstar🎓
Top SchoolArun Patil is a Staff Scientist and bioinformatics expert with a Ph.D. and over a decade of research experience applying NGS and MS/MS proteomics to basic and clinical questions. He has a strong track record in small RNA biology—developing and publishing the open-source tool miRge3.0 during his Johns Hopkins postdoc—and expertise across RNA-Seq, WES/WGS, and proteomics that bridges discovery and genome refinement. Based in Baltimore, he combines hands-on Python and Linux engineering with peer-review and editorial contributions to computational biology literature. Known for integrating proteomics with sequencing to uncover novel isoforms and genes, he brings both academic rigor and practical software development experience to translational research and industry projects.
8 years of coding experience
2 years of employment as a software developer
PG Diploma, Bioinformatics, PG Diploma, Bioinformatics at Institute of Bioinformatics and Applied Biotechnology (IBAB)BS, Microbiology, Botany and Chemistry, BS, Microbiology, Botany and Chemistry at Sri Bhagawan Mahaveer Jain CollegeMaster's degree, Bioinformatics, A, Master's degree, Bioinformatics, A at Sikkim Manipal University - Distance Education
Github Skills (59)
python10
package-management10
data-science10
data-manipulation10
dataframes10
pandas10
conda10
manipulation10
sequencing10
bioinformatics10
rna-seq10
data-structures10
genomics10
gff10
frame10
Programming languages (7)
Github contributions (5)
arunhpatil/bioconda-recipes
Nov 2020 - Nov 2023
Conda recipes for the bioconda channel.
Contributions:11 pushes, 4 branches in 3 years
biocondabioinformaticsrecipesconda
arunhpatil/miRge3_build
Oct 2020 - Sep 2023
Enables building small-RNA libraries for organism of choice to use in miRge3.0 pipeline
Contributions:2 PRs, 12 pushes in 2 years 11 months
pipelinebioinformaticssmall-rnaorganismrna
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