Arun Subramaniyan
Bioinformatics Scientist 2
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolArun Subramaniyan is a bioinformatics scientist with 11 years of experience combining computer architecture, hardware acceleration, and genomics software. Currently on Illumina’s DRAGEN team, he focuses on performance-driven solutions for high-throughput sequencing pipelines. His background includes PhD-level research at the University of Michigan where he accelerated BWA-MEM2 and contributed to hardware-aware optimizations for precision health, and internships at Microsoft improving the SNAP aligner. Earlier work at NVIDIA on Tegra Xavier memory controller modeling reflects a strong foundation in low-level performance engineering that he applies to bioinformatics workloads. Based in San Diego, he brings a rare blend of systems-level hardware insight and production bioinformatics experience that helps close the gap between algorithm and accelerator.
11 years of coding experience
7 years of employment as a software developer
BITS Pilani, Birla Institute of Technology and ScienceMaster of Science - MS, Computer Science, Master of Science - MS, Computer Science at University of Michigan
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (20)
blast10
sequence-alignment10
throughput10
sequencing10
bioinformatics10
genomics10
sequence10
mate9
bioconda9
scalable9
benchmark7
rescue7
benchmarking7
seeding7
performance-analysis4
Programming languages (3)
Github contributions (5)
arun-sub/bwa-mem2
Feb 2020 - Dec 2020
Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.
Contributions:5 commits, 93 pushes, 9 branches in 10 months
bwamatepwaperformancesteps
arun-sub/genomicsbench
May 2020 - Jul 2022
Contributions:1 release, 2 reviews, 132 commits in 2 years 1 month
benchmarkingbenchmark-suiteperformance-analysischaracteristicsgenomics
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