Atnatiwos Gebremedhin
Greater Boston United States
Summary
👤
Senior🎓
Top SchoolAtnatiwos Gebremedhin is a computational biology undergraduate and hands-on researcher bridging wet-lab experience with production-grade computational workflows to tackle problems in protein design, RNA-Seq, and antibiotic resistance. With eight years of experience across university labs and industry, he develops Nextflow pipelines, leverages AlphaFold and GROMACS for structural and dynamics studies, and applies machine learning and clustering (HDBSCAN) to prioritize peptide binders. Comfortable coding in Python and deploying analyses on SLURM HPC systems, he translates structural pocket features into model-ready inputs and automates complex bioinformatics tasks. He also mentors and teaches—having built Python curricula and supported first-generation students—bringing strong communication skills for interdisciplinary teams. Currently a Computational Chemist Intern in Greater Boston, he’s driven to apply computational insight to real-world medical and biotech challenges. An uncommon strength is his blend of end-to-end pipeline engineering with direct wet-lab intuition, enabling more biologically grounded computational models.
8 years of coding experience
1 year of employment as a software developer
Acton-Boxborough Regional High SchoolBachelor of Applied Science - BASc, Computational Biology, Bachelor of Applied Science - BASc, Computational Biology at Rensselaer Polytechnic Institute
Github Skills (7)
bioinformatics6
computational-biology6
scikit4
python3
algorithms3
data-structure3
data-structures3
Programming languages (1)
Github contributions (5)
Naty89/body-fat-percentage
Jul 2020 - Apr 2025
Contributions:4 pushes, 1 branch in 4 years 9 months
Naty89/Click
Nov 2020 - Nov 2020
Contributions:16 commits in 1 day
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