Augustine Dunn
Principal Bioinformatician
Boston, Massachusetts, United States
Summary
🤩
Rockstar🎓
Top SchoolAugustine Dunn is a Principal Bioinformatician with 11 years of experience building agentic AI systems, production data infrastructure, and end-to-end analysis pipelines that accelerate biomedical discovery. He architects conversational agents and natural language→query interfaces for multi-omic datasets—spatial transcriptomics and a 1.15M-cell human atlas among them—so scientists can explore complex data with citation-ready, provenance-tracked results rather than LLM hallucinations. Augustine combines deep domain knowledge in transcriptomics and mechanistic modeling with software engineering best practices (PydanticAI orchestration, DuckDB/Postgres patterns, S3-backed ETL) to make data composable for both human and agent workflows. He has repeatedly scaled tools into production at Flagship Pioneering and Pioneering Intelligence, enabling agent-to-agent collaboration and rapid reuse of mechanistic model components. Comfortable translating between biology and code, he focuses on pragmatic, reproducible systems that lower the barrier for non-computational scientists to run rigorous analyses.
11 years of coding experience
8 years of employment as a software developer
University of GeorgiaUniversity of California, Irvine
Stackoverflow
711reputation
229kreached
6answers
5questions
Github Skills (200)
data-science10
package-management10
python10
computational-biology10
machine-learning10
genomics10
statistics10
conda10
sequence-alignment10
data-analysis10
phylogenetics10
scikit-learn10
bioinformatics10
protein-structure10
os-agnostic10
Programming languages (12)
Github contributions (5)
xguse/zshrc
Nov 2015 - Dec 2021
Contributions:65 pushes, 3 branches, 7 tags in 6 years 1 month
ScottSnapperLab/cookiecutter-data-science
Jul 2016 - Jun 2018
Contributions:2 releases, 32 pushes, 6 branches in 1 year 10 months
standardizedpythonsciencedata-scienceproject-structure
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