B Aksoy
Vice President, Computational Biology
Bedford, Massachusetts, United States
Summary
👤
Senior🎓
Top SchoolB Aksoy is a Vice President of Computational Biology with 14+ years building data, analytics, and experimental platforms that accelerate drug discovery and cell therapy development. He combines a PhD-trained computational biology core with hands-on wet‑lab experience, running end‑to‑end programs from translational research through IND and early clinical stages. Known for scaling single‑cell and T‑cell analytics, he has led cross‑functional teams and one‑person departments to deliver IND‑supporting PK/PD, responder stratification, and automated clinical summaries. Technically fluent in DevOps and production analytics, he has contributed backend data-import improvements to the widely used cBioPortal, highlighting his practical open‑source impact on cancer genomics data handling. Comfortable in nimble startups, he pairs hybrid leadership with day‑to‑day coding and infrastructure work to move programs forward rapidly. Collected experience across academia and industry gives him a rare blend of protocol optimization, experimental design, and production bioinformatics.
14 years of coding experience
13 years of employment as a software developer
Doctor of Philosophy (Ph.D.), Computational Biology and Medicine, Doctor of Philosophy (Ph.D.), Computational Biology and Medicine at Tri-Institutional Training ProgramBachelor of Science (B.Sc.), Molecular Biology and Genetics, Bachelor of Science (B.Sc.), Molecular Biology and Genetics at Boğaziçi University
English, Turkish
Stackoverflow
19reputation
4kreached
0answers
4questions
Github Skills (7)
data-import10
database-management10
sql10
data-integration9
perl9
bioinformatics9
cytoscapejs6
Programming languages (24)
Github contributions (5)
cBioPortal/cbioportal
Mar 2012 - Jun 2015
cBioPortal for Cancer Genomics
Role in this project:
Back-end Developer
Back-end DeveloperContributions:315 commits, 1 PR, 3 comments in 3 years 3 months
Contributions summary:B focused on enhancing the data import process for the cBioPortal project. Their contributions included modifying database import scripts, adding new drug-related features, and restructuring clinical trial data handling. They demonstrated proficiency in scripting and data management techniques by modifying existing code and writing new code. The primary technology focus seemed to be in the processing and storing of clinical trial and drug data within the cBioPortal framework.
precision-medicinesciencecbioportalgenomicscancer
armish/evsrc
Dec 2014 - Apr 2016
Contributions:12 commits, 2 PRs, 3 pushes in 1 year 4 months
evolutionary
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