Bart Charbon
Bio-informatician
Groningen, Groningen, Netherlands
Summary
👤
Senior🎓
Top SchoolBart Charbon is a bio-informatician with 11 years of experience building software solutions for clinical and research environments, currently developing the Variant Interpretation Pipeline at University Medical Center Groningen. He combines deep domain knowledge in bioinformatics with strong software engineering skills, including T-SQL and patient record system development from earlier roles at UMCG and Atos. His work sits at the intersection of genomics and production-grade tooling, turning complex variant data into auditable, usable pipelines for clinical interpretation. Trained in bio-informatics at Hanze, he began his career with hands-on proteomics research during a SELDI-TOF-MS traineeship, giving him practical exposure to experimental data challenges. Colleagues value his ability to translate domain requirements into reliable, maintainable systems that bridge research and healthcare delivery. Based in Groningen, he quietly focuses on robust, reproducible tooling rather than publicity, contributing infrastructure that underpins genomic diagnostics.
11 years of coding experience
6 years of employment as a software developer
BASc, Bio-Informatics, BASc, Bio-Informatics at Hanze
Dutch, English
Stackoverflow
21reputation
366reached
0answers
1question
Github Skills (129)
interpretation10
data-management10
genomics10
javascript10
bam10
pipeline10
fasta10
component-based10
genome10
vcf-files10
java10
sequencing10
predictor10
genetics10
freemarker10
Programming languages (15)
Github contributions (5)
bartcharbon/dataconversion-tools
Apr 2015 - Aug 2023
Contributions:20 pushes in 8 years 6 months
bartcharbon/gavin-plus
May 2018 - Nov 2019
Automated interpretation pipeline to produce rVCF files, and tools that use rVCF files
Contributions:10 PRs, 38 pushes, 31 branches in 1 year 6 months
interpretationpipeline
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