Benjamin Warren
Research Software Engineer at Metrovate
Auckland, Auckland, New Zealand
Summary
👤
Senior🎓
Top SchoolBenjamin Warren is a research software engineer and bioinformatician with 12 years of experience building and deploying scalable bioinformatics software, automated pipelines, and HPC/cloud-based analysis services. Holding an MEng in Engineering Science where he applied neural networks to predict genomic features, he now focuses on creating, optimising and maintaining scientific workflows, software-as-a-service deployments, and user interfaces for data analysis on HPC and cloud platforms. He regularly authors training material and delivers workshops in Linux, Nextflow, Jupyter, Python and scientific computing, bridging the gap between researchers and production infrastructure. Known for pragmatic tooling and robust CI/CD practices, he also brings cross-domain experience from web development and enterprise automation, enabling reproducible, production-ready bioinformatics solutions.
12 years of coding experience
3 years of employment as a software developer
Applied Microbiology, Microbiology, Applied Microbiology, Microbiology at Auckland University of TechnologyMaster of Engineering - MEng, Engineering Science, Master of Engineering - MEng, Engineering Science at The University of Auckland
Stackoverflow
101reputation
0reached
0answers
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Github Skills (91)
dataflow10
slurm10
pipeline-framework10
reproducible-science10
singularity10
nextflow10
pipeline10
groovy10
dsl10
multi-user10
reproducible-research10
docker10
aws10
bioinformatics10
data-driven9
Programming languages (11)
Github contributions (5)
warrenson/publish
Aug 2018 - Nov 2023
Contributions:1 release, 12 pushes, 5 branches in 5 years 3 months
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