Brandon Sie
Ph.D. Candidate
Boston, Massachusetts, United States
Summary
👤
Senior🎓
Top SchoolBrandon Sie is a Ph.D. candidate in Bioinformatics and Integrative Genomics at Harvard Medical School with eight years of experience combining computational and wet-lab research to probe protein interactions, immune repertoires, and degron-driven proteostasis. He builds reproducible analysis pipelines and R packages, develops Shiny dashboards, and applies machine learning, AlphaFold modeling, and cloud/HPC workflows to large-scale immunological and sequencing datasets. His hands-on wet-lab skills—phage display, PhIP-Seq, robotic liquid handling, and stability assays—complement his data science work, enabling end-to-end project leadership from experiment design to statistical interpretation. Former roles at Johns Hopkins and the FDA honed his ability to translate high-dimensional assay outputs into novel biological insights and regulatory-grade data curation. Outside the lab he brings a background in primary care, teaching, and martial arts, reflecting strong communication, pedagogy, and discipline that shape collaborative, impact-driven science.
8 years of coding experience
2 years of employment as a software developer
Ph.D., Bioinformatics and Integrative Genomics, Ph.D., Bioinformatics and Integrative Genomics at Harvard Medical SchoolBachelor of Science (B.S.), Bioengineering, Bachelor of Science (B.S.), Bioengineering at UC Berkeley
Github Skills (14)
seq10
r-package10
overlap10
pipeline6
data-analysis4
dataflow4
noaa4
disk3
disk-image3
react3
wallpaper3
nextjs2
linux2
windows1
Programming languages (4)
Github contributions (5)
brandonsie/brandonsie.github.io
Dec 2018 - Oct 2023
Personal website
Contributions:9 PRs, 235 pushes, 2 branches in 4 years 10 months
reactnextjs
brandonsie/epitopefindr
Oct 2018 - Oct 2021
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
Contributions:1 release, 249 commits, 7 PRs in 3 years
r-packagepeptide-sequencesregionsoverlapidentify
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