Bryan Lajoie

Principal Scientist at Element Biosciences

San Diego, California, United States
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Summary

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Senior
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Top School
Bryan Lajoie is a Principal Scientist with a PhD in Bioinformatics and over a decade of experience building genomics tools, algorithms, and production software for research and clinical sequencing. He has driven product-ready solutions at Illumina and helped create a new DNA sequencing platform at Element Biosciences, bridging deep computational method development with customer-facing integration and product strategy. His work spans end-to-end pipelines for WGS, RNA-Seq and 3D genome assays (co-inventor of Hi-C) and includes large-scale data processing, automation and reference architecture design. Comfortable working across research, engineering, and commercial teams, he repeatedly converts novel research insights into practical, regulated workflows. Based in San Diego, he combines high-impact academic pedigree (many top-tier publications) with hands-on product delivery in genomics and diagnostics.
code11 years of coding experience
job16 years of employment as a software developer
bookUMass Lowell
bookDoctor of Philosophy (Ph.D.) Bioinformatics and Computational Biology, Doctor of Philosophy (Ph.D.) Bioinformatics and Computational Biology at UMass Chan Medical School
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Stackoverflow

Stats
103reputation
5kreached
0answers
5questions
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Github Skills (121)

python10
cancer-genomics10
genomics10
nf-core10
bam10
nextflow10
htslib10
data-visualization10
fasta10
bioconda10
component-based10
aggregate10
genome10
sequencing10
pypi10

Programming languages (15)

C#JavaCMakefileTeXNextflowHTMLPerl

Github contributions (5)

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dekkerlab/cworld-dekker

Aug 2015 - May 2016

perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
Contributions:114 commits, 1 push, 3 comments in 9 months
nim-langperl5manualperlhi-c
blajoie/igv-webapp

Jun 2019 - Jul 2024

IGV Web App
Contributions:4 pushes in 5 years 1 month
igvreact
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