Changlin Ke
PhD Candidate
Amsterdam, North Holland, Netherlands
Summary
👤
Senior🎓
Top SchoolChanglin Ke is a PhD candidate in computational biology based in Amsterdam with nine years of hands-on experience turning complex NGS and single-cell datasets into reproducible insights. With a strong foundation in biology, computer science, biostatistics and ML, he builds and maintains bioinformatics pipelines (short- and long-read, metagenomics, scRNA-seq, de novo RNA-seq) and deploys them in Linux HPC and cloud environments using Python and R. His work spans academic and commercial settings—from Wageningen University to Macrogen Europe and BGI—where he has delivered QC tooling, format conversion utilities, and customized secondary analyses for diverse partners. He combines rigorous methodological benchmarking (e.g., deconvolution and signature matrix construction) with practical data-delivery experience, and is driven by a Feynman-like credo: to create is to understand. An understated strength is his ability to bridge FAIR data practices and engineering-friendly pipelines, making complex analyses both reproducible and usable by collaborators.
9 years of coding experience
1 year of employment as a software developer
Master of Science - MS, bioinformatics and system biology, Master of Science - MS, bioinformatics and system biology at Vrije Universiteit Amsterdam (VU Amsterdam)Master of Science - MS, bioinformatics and system biology, Master of Science - MS, bioinformatics and system biology at University of AmsterdamBachelor of Science - BS, Bioinformatics, Bachelor of Science - BS, Bioinformatics at Huazhong Agricultural University
Github Skills (50)
reference-implementation10
common-workflow-language9
science9
openapi8
webui8
llm8
openai8
amdgpu8
bioinformatics8
golang8
ollama7
ai7
darwin6
systems-biology6
sequence6
Programming languages (8)
Github contributions (5)
ElderMedic/HNSCCdeCon
May 2022 - Sep 2022
Contributions:23 commits, 21 pushes in 3 months
ElderMedic/RAREMGWAS
May 2021 - May 2022
Contributions:1 release, 7 commits, 5 pushes in 11 months
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