Chenhao Li
Instructor In Medicine at Broad Institute of MIT and Harvard
Cambridge, Massachusetts, United States
Summary
👤
Senior🎓
Top SchoolChenhao Li is a computational biologist and Instructor in Medicine at Massachusetts General Hospital with 11 years of experience applying quantitative methods to high-throughput sequencing and microbiome dynamics. Trained as a PhD in Computational Biology at the National University of Singapore, he combines data mining, visualization, and mathematical modeling to probe spatial-temporal host–microbiome interactions. His career spans research and postdoctoral roles at the Genome Institute of Singapore, Broad Institute, and MGH, reflecting a track record of translating computational insights into biological understanding. Beyond routine bioinformatics, he focuses on dynamic models of microbial communities—bringing together statistical rigor and biological intuition to tackle complex, time-resolved systems.
11 years of coding experience
1 year of employment as a software developer
Doctor of Philosophy (Ph.D.), Computer Science (Computational Biology), Doctor of Philosophy (Ph.D.), Computer Science (Computational Biology) at National University of Singapore
English, Chinese
Stackoverflow
19reputation
1kreached
1answer
4questions
Github Skills (89)
microbiome10
bioinformatics10
file-manipulation9
singularity9
binning9
reproducible-science9
nextflow9
pipeline9
fasta9
slurm9
dataflow9
seq9
genome-assembly9
immunology9
reproducible-research9
Programming languages (10)
Github contributions (5)
CSB5/INC-Seq
Jan 2016 - Sep 2020
Contributions:2 releases, 46 commits, 1 PR in 4 years 8 months
pipelinenanoporemoleculesequencingsingle-molecule
CSB5/BEEM
Mar 2018 - Jul 2020
BEEM: Estimating Lotka-Volterra models from time-course microbiome sequencing data
Contributions:1 release, 12 PRs, 26 pushes in 2 years 3 months
beemsequencing-datalotka-volterraestimatingsequencing
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