Chien-chi Lo

Research Technologist at Los Alamos National Laboratory

Los Alamos, New Mexico, United States
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Summary

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Rockstar
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Chien-chi Lo is a research technologist at Los Alamos National Laboratory with 13 years of experience applying bioinformatics and computational methods to sequence assembly, mapping, and metagenomic analysis. He holds dual B.S. degrees in public health and medical technology, an M.S. in bioinformatics, and a second M.S. in computer science, blending wet-lab understanding with strong computational skills. His work has included developing hidden Markov models for viral alignment, Pyro-sequencing analysis, and biological database and web-interface development, demonstrating an ability to move projects from algorithm design to production workflows. Based in Los Alamos, he focuses on building reproducible workflows and data analysis pipelines that bridge experimental and in silico research. An underappreciated strength is his cross-disciplinary training, which lets him translate domain-specific biology needs into robust software solutions.
code13 years of coding experience
job2 years of employment as a software developer
bookMaster of Science (M.S.), Bioinformatics, Master of Science (M.S.), Bioinformatics at National Yang Ming University
bookMaster of Science (M.S.), Computer Science, Master of Science (M.S.), Computer Science at The University of New Mexico
languagesChinese, English
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Github Skills (91)

github10
package-management10
coverage10
genomes10
genomics10
genomics-visualization10
genes10
next-generation-sequencing10
bioconda10
git10
biology10
genome10
conda10
sequencing10
barplot10

Programming languages (13)

C++CNextflowPerlHTMLJupyter NotebookShellAMPL

Github contributions (5)

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LANL-Bioinformatics/FaQCs

Dec 2012 - Mar 2020

Quality Control of Next Generation Sequencing Data
Contributions:5 releases, 99 commits, 62 pushes in 7 years 4 months
next-generationquality-controlpipelinesequencing-datanext-generation-sequencing
microbiomedata/ReadsQC

May 2020 - Mar 2025

Contributions:9 releases, 9 reviews, 8 PRs in 4 years 10 months
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Chien-chi Lo - Research Technologist at Los Alamos National Laboratory