Chris Stubben
Bioinformatics Analyst
Salt Lake City, Utah, United States
Summary
👤
Senior🎓
Top SchoolChris Stubben is a bioinformatics analyst with 14 years of experience applying machine learning, NLP, and statistical analysis to sequencing and genomic data. Based in Salt Lake City, he leads reproducible workflows and interactive visualizations at Huntsman Cancer Institute, analyzing CRISPR, microRNA, bulk, single-cell and spatial transcriptomics on HPC clusters. His earlier work at Los Alamos fused text-indexing and cloud biosurveillance with pathogen discovery, producing R packages and automated search systems that scaled to thousands of strains. Comfortable moving between hands-on pipeline engineering and client-facing consultation, he translates complex statistical methods into clear reports for researchers. With a Ph.D. in Biology and a background in biodiversity databases and Unix/Postgres tooling, he pairs deep domain knowledge with practical software and data-engineering skills.
14 years of coding experience
5 years of employment as a software developer
Ph.D., Biology, Ph.D., Biology at New Mexico State UniversityB.S, M.S., Botany, B.S, M.S., Botany at Brigham Young University
Github Skills (57)
pubmed10
aggregate10
searching10
fastq10
bioconductor10
bioinformatics10
genomics10
fasta10
pypi10
gdc10
python9
parser9
parsing9
bioconda9
data-visualization9
Programming languages (3)
Github contributions (5)
cstubben/pmcXML
May 2013 - Mar 2019
Tools for searching and parsing full text XML articles and tables in Pubmed Central
Contributions:96 commits, 13 pushes, 3 comments in 5 years 11 months
xmlfull-textparsingsearchingparser
cstubben/ENAbrowseR
Mar 2016 - May 2016
Contributions:29 commits, 28 pushes, 1 branch in 2 months
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