Christophe Avenel
Bioimage Analyst at SciLifeLab / NMI Sweden
Greater Uppsala Metropolitan Area Sweden
Summary
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SeniorChristophe Avenel is a Bioimage Analyst with 12 years of experience combining academic rigor and product-focused software leadership, currently supporting life scientists at the BioImage Informatics Facility (BIIF - SciLifeLab / NMI) in Uppsala. He holds a PhD in computer science and completed three postdoctoral years at Uppsala University, bringing deep expertise in image analysis and open-source tools such as Fiji, CellProfiler, and QuPath. Before joining SciLifeLab he co-founded and served as Director of Software Development at CADESS Medical, building a cloud-based decision support platform for prostate cancer diagnostics. Christophe blends research-grade algorithmic understanding with practical deployment experience, able to translate complex microscopy data into usable pipelines and training for non-specialists. Based in Sweden, he is known for championing free tools and reproducible workflows that bridge academic research and clinical application.
12 years of coding experience
7 years of employment as a software developer
French, English
Github Skills (100)
high-resolution10
variants10
image-viewer10
spatial-transcriptomics10
seq10
immunology10
transcriptomics10
gene-expression10
digital-pathology10
spatial10
zooming10
microscopy10
statistics10
browser10
single-cell-analysis10
Programming languages (11)
Github contributions (5)
TissUUmaps/TissUUmaps-docs
Apr 2022 - Nov 2023
Documentation for TissUUmaps
Contributions:2 PRs, 60 pushes, 1 branch in 1 year 7 months
cavenel/ev3-print3rbot
May 2015 - Mar 2017
Contributions:30 commits, 2 PRs, 29 pushes in 1 year 10 months
python-codepythonev3ev3dev
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