Christophe Becavin
Teacher at Université Côte d'Azur
Nice, Provence-Alpes-Côte d'Azur, France
Summary
👤
Senior🎓
Top SchoolChristophe Becavin is an assistant professor and bioinformatician with 15 years of experience developing pipelines and statistical methods for multi-omics and single-cell datasets, currently leading research on cellular characterization of the human airways at Université Côte d'Azur. He teaches bioinformatics, biostatistics and data science across universities and institutes, mentors student projects, and contributes to the Human Cell Atlas initiative. His work spans single-cell RNASeq and ATACSeq, multi-omics integration, and applied machine learning, with prior roles building public multi-omics platforms at Institut Pasteur. Trained in systems biology and theoretical physics (ENS, Pierre et Marie Curie), he combines strong quantitative foundations with hands-on software development—evidenced by public tools like Bacnet and Listeriomics. Open to collaboration or consultancy, he also tracks SARS-CoV-2 entry factors in lung cells, blending immediate public-health relevance with methodological innovation.
9 years of coding experience
9 years of employment as a software developer
Doctor of Philosophy (PhD) Systems Biology, Doctor of Philosophy (PhD) Systems Biology at Ecole normale supérieureMagistère de Physique Theoretical and Mathematical Physics, Magistère de Physique Theoretical and Mathematical Physics at Université Paris CitéMaster 2 Theoretical and Mathematical Physics, Master 2 Theoretical and Mathematical Physics at Pierre and Marie Curie UniversityPreparatory school to go to french engineer schools Mathematics and Physics, Preparatory school to go to french engineer schools Mathematics and Physics at Lycée Camille Jullian, Bordeaux
French, English
Github Skills (52)
bacnet10
aggregate10
single-cell-genomics10
python10
package-management10
seurat10
conda10
transcriptomics10
fastq10
bioinformatics10
data-visualization10
genomics10
fasta10
pypi10
bioconda10
Programming languages (9)
Github contributions (5)
becavin-lab/checkatlas
Feb 2022 - Jul 2022
One liner tool to check the quality of your single-cell atlases.
Contributions:96 commits, 20 PRs, 375 pushes in 5 months
atlasestaigafilemakerqualitysingle-cell
AntoineCollin/scMusketeers
Jun 2024 - Jan 2025
Contributions:29 PRs, 71 pushes, 5 branches in 6 months
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