Chunxuan Shao
Computational Biologist
Heidelberg, Baden-Württemberg, Germany
Summary
👤
Senior🎓
Top SchoolChunxuan Shao is a computational biologist with 11 years of experience applying statistical and multi-omics methods to oncology, neurodevelopment and autoimmune disease research. Currently at HotSpot Therapeutics, he combines single-cell RNA/ATAC integration, consensus gene regulatory network inference and predictive modeling to translate complex molecular data into actionable insights. His postdoctoral work at DKFZ advanced methods for spatial resolution of scRNA-seq, LASSO-driven localization, NMF clustering of large-scale single-cell datasets, and synthetic lethal partner discovery for cancer mutations. Trained as a geneticist with a PhD from the CAS-MPG Partner Institute, he also has deep experience in proteogenomics, alternative splicing analyses and whole-genome siRNA screen interpretation. Colleagues would describe him as a method-focused scientist who bridges theoretical systems biology and translational targets, often finding signal in noisy, high-dimensional data.
11 years of coding experience
11 years of employment as a software developer
Doctor of Philosophy - PhD, Genetics, Doctor of Philosophy - PhD, Genetics at CAS-MPG Partner Institute for Computational BiologyBachelor's degree, Biology, General, Bachelor's degree, Biology, General at Guangxi University
Github Skills (200)
autocomplete10
bash10
fuzzy10
vim10
command-line-tool10
unix10
hyphenation10
cli10
finder10
checker10
readline10
tmux10
zsh10
tui10
fzf10
Programming languages (18)
Github contributions (5)
ccshao/nimfa
Apr 2015 - Aug 2018
Contributions:12 commits, 35 pushes in 3 years 5 months
python-librarytechniquespythonfactorizationmatrix-factorization
ccshao/synlet
Aug 2021 - Apr 2023
Contributions:8 pushes, 4 branches in 1 year 8 months
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