Chunyu Ma
Postdoctoral Scholar at Penn State University
Chesterfield, Missouri, United States
Summary
👤
SeniorChunyu Ma is a Postdoctoral Scholar and computational biologist with a Ph.D. in Bioinformatics and over a decade of experience applying omics integration, knowledge-graph engineering, and causal/Explainable AI to drug discovery and repurposing. Skilled in GNNs, LLM-RAG pipelines, multimodal embeddings, and causal graph modeling, Chunyu builds systems that fuse multi-omics, EHR, and literature-derived knowledge to predict mechanisms of action and treatment hypotheses. Their background spans academia and industry—roles at Penn State, Emory, Washington University, Phase Genomics, and BGI—bringing both rigorous research and product-minded engineering experience. Notably, they combine advanced AI-agent workflows with graph databases to make biomedical predictions interpretable and actionable, bridging wet-lab insights and computational discovery.
9 years of coding experience
8 years of employment as a software developer
Chinese, English, Chinese
Github Skills (56)
biology10
expander10
package-management10
conda10
bioinformatics10
systems-biology10
bioconda10
geometric-deep-learning9
pytorch9
minhash9
graph9
agent9
deep-learning9
graph-neural-network9
graph-convolutional-networks9
Programming languages (6)
Github contributions (5)
chunyuma/KGML-xDTD
Jan 2023 - Mar 2023
Contributions:1 review, 28 commits, 2 PRs in 2 months
chunyuma/resume
Mar 2019 - Dec 2021
Contributions:1 push, 1 branch in 2 years 9 months
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