Cyril Matthey-doret
Senior Data Science Engineer
Lausanne, Vaud, Switzerland
Summary
🤩
Rockstar🎓
Top SchoolCyril Matthey-doret is a Senior Data Science Engineer based in Lausanne with nine years of experience turning computational biology research into production-grade data platforms and tools. Trained as a computational biologist (PhD, Sorbonne) and experienced in genomics, he blends deep domain knowledge in omics and Hi-C analysis with software engineering practices like CI/CD, testing, and reproducible pipelines. At the Swiss Data Science Center he builds scalable data science infrastructure and has taught hands-on large-scale data science at EPFL, exposing students to end-to-end pipelines and Spark clusters. He has a track record of shipping analysis toolkits, supervising students, and establishing engineering best practices inside research labs—skills that make him effective at bridging research and production. Notably, his background includes generating a chromosome-level assembly and developing algorithms to detect chromatin structures, highlighting a rare combination of wet-lab problem insight and robust engineering.
9 years of coding experience
5 years of employment as a software developer
Doctor of Philosophy - PhD, Computational Biology, Doctor of Philosophy - PhD, Computational Biology at Sorbonne UniversitéBachelor of Science, Biology, Bachelor of Science, Biology at University of Lausanne (Switzerland)Certificat de Maturité Gymnasiale, Biologie - Chimie, Certificat de Maturité Gymnasiale, Biologie - Chimie at Gymnase d'YverdonMaster of Science, Bioinformatics, Master of Science, Bioinformatics at University of Lausanne - UNIL
English, French, German, Chinese
Stackoverflow
192reputation
6kreached
4answers
3questions
Github Skills (200)
package-management10
coverage10
file-format10
knitr10
genomics10
genomics-visualization10
pattern10
bioconda10
sparse10
conda10
pattern-recognition10
bioinformatics10
python-bindings10
hydrogen10
bam9
Programming languages (23)
Github contributions (5)
cmdoret/strangerseq
Jul 2019 - Mar 2021
Contributions:10 releases, 54 pushes, 3 branches in 1 year 8 months
koszullab/hicstuff
Jan 2019 - Nov 2022
Simple library/pipeline to generate and handle Hi-C data.
Contributions:11 releases, 5 reviews, 381 commits in 3 years 10 months
pipeline-librarypipelinecondabioinformatics-pipelinegenomics
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