Daisie Huang
Software Engineer at CanDIG / University Health Network
Vancouver, British Columbia, Canada
Summary
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RockstarDaisie Huang is a software engineer and scientific developer based in Vancouver with 14 years of experience specializing in scientific software and phylogenetics. She contributes to established open-source bioinformatics projects—most notably BioPerl—where her backend fixes improved PAML output parsing, codon-usage calculations, and added tests to boost reliability. Comfortable navigating both research and production code, she brings domain expertise in sequence analysis and phylogenetic data handling to engineering problems. Colleagues rely on her for precise, reproducible tooling that bridges computational biology and software best practices.
13 years of coding experience
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (4)
bioinformatics10
perl10
bioperl10
regular-expression9
Programming languages (12)
Github contributions (5)
bioperl/bioperl-live
Jun 2012 - Sep 2012
Core BioPerl 1.x code
Role in this project:
Back-end Developer
Back-end DeveloperContributions:27 commits in 2 months
Contributions summary:Daisie primarily contributed to the `BioPerl 1.x` codebase by fixing bugs related to parsing PAML output files. Their commits involved modifying the `Bio/Tools/Phylo/PAML.pm` module to correctly parse sequence data and distance matrices, as well as addressing issues in codon usage calculations. They also added test files to validate the fixes. These changes indicate a focus on improving the accuracy and reliability of the bioinformatics toolkit.
bioperlpdb-filesbiologytoolkitbioinformatics
daisieh/vagrant-dryad
Feb 2015 - Nov 2018
Vagrant and Ansible config for building a Dryad VM
Contributions:66 pushes, 72 branches in 3 years 9 months
ansiblevagrantconfig
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