Daniel Carlin
Senior Bioinformatics Scientist
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolDaniel Carlin is a Senior Bioinformatics Scientist with 15 years of experience applying computational systems biology and multi-omics integration to complex problems in cancer, neurodegeneration, cardiology, and development. Based at UC San Diego, he leads analysis of bulk, single-cell, spatial transcriptomics and epigenomic datasets to uncover regulatory programs and intercellular signaling, with notable work on Alzheimer’s, Parkinson’s, and cardiomyopathy models. He combines deep domain expertise in gene regulatory networks with practical machine learning and data-science tooling in R and Python, translating network topology changes into biological insight. Daniel’s background spans academic research and industry-facing bioinformatics SaaS development, and he often leverages circadian and temporal patterns to reveal non-obvious regulatory dynamics.
15 years of coding experience
Bachelor of Science - BS, Bioengineering and Biomedical Engineerin, Bachelor of Science - BS, Bioengineering and Biomedical Engineerin at Duke UniversityUniversity of California Santa Cruz
Github Skills (30)
galaxy5
gene-expression5
robotics5
bioinformatics4
seq4
scenic4
genomics4
rna-seq4
python3
mutual-information3
visualize2
gwas2
azerothcore2
mass-spectrometry1
inference1
Programming languages (4)
Github contributions (5)
decarlin/UCSD_BigMechanism
Mar 2015 - Mar 2016
Contributions:31 commits, 28 pushes, 1 branch in 1 year
decarlin/prophetic-granger-causality
Oct 2016 - Oct 2017
Contributions:1 PR, 3 pushes, 1 branch in 1 year
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