Deyvid Amgarten
Professor Assistente at Faculdade Israelita Albert Einstein
São Paulo, Brazil
Summary
👤
Senior🎓
Top SchoolDeyvid Amgarten is a bioinformatics scientist and assistant professor in São Paulo with eight years of experience applying machine learning and NGS analyses to infectious disease diagnostics and environmental virology. He leads multidisciplinary teams at Genesis Genomics and previously at Hospital Israelita Albert Einstein, translating research-grade pipelines into routine precision-diagnostic assays. Holding a PhD and MSc in Bioinformatics from the University of São Paulo and an international internship at the Viral Bioinformatics Resource Center, he blends deep computational skills (Perl, Python, R, C, Unix) with practical lab-aware tool development. A certified AWS Solutions Architect, he also coordinates postgraduate training in medical genomics and routinely mentors students, reflecting a strong commitment to capacity building. Notably, his PhD work focused on machine-learning prediction for prokaryotic viruses in metagenomic datasets, a niche that underpins his current diagnostics and environmental-virology projects.
8 years of coding experience
7 years of employment as a software developer
Doctor of Philosophy - PhD, Bioinformatics and data analytics, Doctor of Philosophy - PhD, Bioinformatics and data analytics at Universidade de Sao PauloUniversity of São PauloExchange Scholarship, Biology, General, Exchange Scholarship, Biology, General at Universidade de Aveiro / University of Aveiro
English, holandês
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (8)
minhash10
retrieval9
sequencing9
bioinformatics9
freeradius7
genomics4
asf4
pipeline3
Programming languages (1)
Github contributions (5)
deyvidamgarten/MARVEL
Jan 2018 - Jul 2018
MARVEL: Metagenomic Analyses and Retrieval of Viral Elements
Contributions:44 commits, 2 PRs, 28 pushes in 6 months
analyseselementsviralbioinformaticsretrieval
LaboratorioBioinformatica/vHULK
May 2019 - Jun 2022
viral Host UnveiLing Kit (vHULK)
Contributions:33 commits, 1 PR, 25 pushes in 3 years 1 month
hostviralasffreeradiussuite
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