Dima Molodenskiy
Senior Scientific Software Engineer New Methods For Structural Modeling at EMBL
Hamburg, Germany
Summary
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Senior🎓
Top SchoolDima Molodenskiy is a senior scientific software engineer at EMBL Hamburg with eight years of experience translating structural biology challenges into robust computational methods. He advanced from research engineer roles in Russian institutes through a postdoctoral position to leading new-methods development for structural modeling, blending deep scientific domain knowledge with practical software engineering. His background in nanotechnology and a Ph.D.-level research trajectory enable him to bridge experimental insight and algorithmic design, delivering tools that accelerate structural interpretation. Based in Hamburg, he is comfortable operating at the intersection of research and production code, shipping reproducible pipelines and prototypes used by domain specialists. Colleagues know him for combining rigorous academic thinking with pragmatic implementation choices that prioritize usability and validation.
8 years of coding experience
14 years of employment as a software developer
Specialist, Nanotechnology, Specialist, Nanotechnology at Moscow State University
English, German, Russian
Github Skills (16)
bioinformatics10
folding10
phylogenetics9
sequence-alignment9
genomics9
protein-structure9
cvs8
biopython7
java7
python7
git-repository7
deep-learning3
prediction3
pytorch3
data-formats1
Programming languages (3)
Github contributions (5)
emblsaxs/gnnom
Jan 2022 - May 2024
Open source code for gnnom
Contributions:1 release, 3 PRs, 72 pushes in 2 years 4 months
python
KosinskiLab/alphafold
Aug 2023 - Mar 2025
Contributions:5 PRs, 13 pushes, 1 issue in 1 year 7 months
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