Dmitry Avtonomov
Staff Data Scientist
Portland, Oregon, United States
Summary
👤
Senior🎓
Top SchoolDmitry Avtonomov is a Staff Data Scientist with 11+ years specializing in mass spectrometry, liquid chromatography, and ion mobility data processing, currently based in Portland, Oregon. He builds high-performance algorithms and interactive visualizations (C++, Qt, Java) and leads open-source projects used widely in proteomics such as BatMass, IMTBX, MSFragger, FragPipe, DIA Umpire and DeltaMass. His background blends academic research (PhD-level work and a long research fellowship at University of Michigan) with industry engineering roles adapting software for cutting-edge instruments like timsTOF. Known for applying Bayesian statistics and signal-processing rigor to noisy LC/MS data, he also authors libraries for broad data format support (mzML, mzXML, Thermo RAW, Bruker .d). Colleagues rely on him for turning complex analytical workflows into practical, user-friendly tools that accelerate proteomics discovery.
11 years of coding experience
6 years of employment as a software developer
MS, MS at Moscow Institute of Physics and Technology (State University) (MIPT)PhD, PhD at INEPCP Russian Acad. Sci.
English, Russian, German
Stackoverflow
8,979reputation
2.5mreached
27answers
32questions
git-checkout
top-5%
code-formatting
top-5%
git
top-5%
html
top-5%
git-branch
top-5%
Github Skills (200)
invocation10
command-line-interface10
forestry10
genetic-algorithm10
test-explorer10
torrent10
argparse10
command-line-parser10
self-organizing-map10
user-interface10
php10
orange10
argument-parsing10
command-line10
liquid10
Programming languages (18)
Github contributions (5)
Nesvilab/dia-umpire-gui
Apr 2016 - May 2017
Contributions:3 releases, 126 commits, 78 pushes in 1 year
chhh/jaydio
Apr 2018 - Mar 2022
A Java library to perform direct I/O in Linux, bypassing file page cache.
Contributions:3 reviews, 2 PRs, 6 pushes in 4 years
java-librarypage-cachelinuxdirectcache
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